Example Notebooks

Notebooks

There are notebooks with examples on how to use dpks in GitHub Notebooks; the notebooks are listed in the table below.

Quant Matrix: Demonstrates the basic use of the QuantMatrix. Start here.

Differential Expression: Demonstrates how to compute differences between two experimental conditions.

Explainable Machine Learning: Demonstrates how to compute feature importance for proteins when predicting some experimental conditions.

Pathway Enrichment: Demonstrates how to perform pathway enrichment analysis.

Overall Workflow: A concise demonstration of how to string together functionality in DPKS.